Supporting Information for MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks
نویسندگان
چکیده
Reaction Symbol Value [for simulation] Reference Actin diffusion kactin, diff 20 μm 2 · s−1 [80 s−1] a α-actinin diffusion kα,diff kactin, diff/10 s −1 a NMIIA mini-filament diffusion kNMIIA, diff kactin, diff/100 s −1 a Actin polymerization at plus end kactin,poly,+ 11.6 μM −1s−1 [0.151 s−1] b [1] Actin polymerization at minus end kactin,poly,− 1.3 μM −1s−1 [0.017 s−1] b [1] Actin depolymerization at plus end kactin,depoly,+ 1.4 s −1 [1] Actin depolymerization at minus end kactin,depoly,− 0.8 s −1 [1] NMIIA head binding kNMIIA,bind 0.2 s −1 [2] NMIIA head unbinding under no external load k NMIIA,unbind 1.7 s −1 c α-actinin binding kα,bind 0.7 μM −1s−1 [0.009 s−1] [3] α-actinin unbinding under no external load k α,unbind 0.3 s −1 [3]
منابع مشابه
MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks
Active matter systems, and in particular the cell cytoskeleton, exhibit complex mechanochemical dynamics that are still not well understood. While prior computational models of cytoskeletal dynamics have lead to many conceptual insights, an important niche still needs to be filled with a high-resolution structural modeling framework, which includes a minimally-complete set of cytoskeletal chemi...
متن کاملActomyosin sliding is attenuated in contractile biomimetic cortices
Myosin II motors embedded within the actin cortex generate contractile forces to modulate cell shape in essential behaviors, including polarization, migration, and division. In sarcomeres, myosin II-mediated sliding of antiparallel F-actin is tightly coupled to myofibril contraction. By contrast, cortical F-actin is highly disordered in polarity, orientation, and length. How the disordered natu...
متن کاملPreprint: A Combination of Actin Treadmilling and Cross-Linking Drives Contraction of Random Actomyosin Arrays
We investigate computationally the self-organization and contraction of an initially random actomyosin ring. In the framework of a detailed physical model for a ring of crosslinked actin filaments and myosin-II clusters, we derive the force balance equations and solve them numerically. We find that to contract, actin filaments have to treadmill and to be sufficiently crosslinked, and myosin has...
متن کاملA Combination of Actin Treadmilling and Cross-Linking Drives Contraction of Random Actomyosin Arrays.
We investigate computationally the self-organization and contraction of an initially random actomyosin ring. In the framework of a detailed physical model for a ring of cross-linked actin filaments and myosin-II clusters, we derive the force balance equations and solve them numerically. We find that to contract, actin filaments have to treadmill and to be sufficiently cross linked, and myosin h...
متن کاملThe F-actin bundler α-actinin Ain1 is tailored for ring assembly and constriction during cytokinesis in fission yeast
The actomyosin contractile ring is a network of cross-linked actin filaments that facilitates cytokinesis in dividing cells. Contractile ring formation has been well characterized in Schizosaccharomyces pombe, in which the cross-linking protein α-actinin SpAin1 bundles the actin filament network. However, the specific biochemical properties of SpAin1 and whether they are tailored for cytokinesi...
متن کامل